PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3642_p3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SBP
Protein Properties Length: 347aa    MW: 37238.8 Da    PI: 8.2952
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3642_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP24.19.4e-081081295778
                 SS--S-STTTT-------S--- CS
         SBP  57 eekrsCrrrLakhnerrrkkqa 78 
                  +krsCrrrLa+hnerrrk+q+
  RrC3642_p3 108 GSKRSCRRRLAGHNERRRKPQP 129
                 68*****************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.6E-565114IPR004333Transcription factor, SBP-box
PROSITE profilePS5114110.33170127IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.62E-1071131IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MNMGSNSGPG RGPGQAESGG SSTESSSLSG GLMFGQRIYF EDAGGGTGSS SSGGSNRRVR  60
GGGSGPSGQI PRCQVEGCGM DLTNAKGTEC VECTLKHPKS LSLVSNKGSK RSCRRRLAGH  120
NERRRKPQPA SLSVLSSRYG RIAPSLYGNA ETTMNGSFLG SQEMGWTNTR TLDTRVMRRP  180
SWQINPMNVF SQGSVSGGGG GGISFSSPEV MDTKPESYKG IGSDSNCALS LLSNPHQPHD  240
NTNDNNTWRT SSGFGPMTVT MAQPPPAPSQ HQYLNPPWVF KDDDNNCQND MSPVLNLGRF  300
TETEMGGGTT MGEFELSDHQ HQNRRQYMEG ENSRAYDSSS HHHNWSL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553370.0AC155337.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH117N09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013747785.11e-179PREDICTED: squamosa promoter-binding-like protein 9
SwissprotQ700W21e-162SPL9_ARATH; Squamosa promoter-binding-like protein 9
TrEMBLA0A078CXM61e-180A0A078CXM6_BRANA; BnaA05g02680D protein
STRINGBra004674.1-P1e-177(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21442775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.11e-132squamosa promoter binding protein-like 9